Taxonomic classification
Unique sequence IDs, excluding the four query rows.
CCL20 Evolutionary Explorer
Explore protein-alignment coverage, organism taxonomy, lineage classification, and overlap between CCL20 alignment sets.
4,124Unique sequence IDs
865Organisms
268Mammal species
577Non-mammal species
Aligned region length distribution
Length is calculated from reported alignment start and end coordinates.
Sequence and organism explorer
Search accessions, organisms, taxonomy IDs, or lineage text.
| Sequence ID | Organism | Class | TaxID | Region | Sets | Lineage |
|---|
Top taxonomic groups
Select a lineage depth from the end of each NCBI lineage.
Alignment-set sizes
Taxonomy cladogram
Rectangular cladogram constructed from NCBI lineage labels. Branch lengths show taxonomy depth, not evolutionary distance.
Runtime protein alignment
Reference-guided multiple alignment using real NCBI protein FASTA sequences cached with this project.
Runtime alignment is limited to 50 proteins. It uses global pairwise alignment against the selected reference and merges reference-coordinate gaps into a common alignment.
Rendered alignment viewer
Choose an existing rendered image and adjust magnification.
What this page supports
Accession and organism search, mammal/non-mammal classification, NCBI lineage browsing, reported alignment-length summaries, alignment-set membership, overlap analysis, and zoomable rendered alignments.
Current limitation
Protein FASTA sequences for all 4,120 accessions are now cached from NCBI. The runtime tool provides reference-guided alignments, consensus, and identity. A statistically inferred phylogram with evolutionary branch lengths still requires a dedicated workflow such as MAFFT plus IQ-TREE or a comparable model-based method.
Reference paper
The supplied paper is “ExpressAnalyst: A unified platform for RNA-sequencing analysis in non-model species” (Nature Communications, 2023). It provides methodological context but is not the underlying CCL20 sequence dataset.